Assembly_1_vs_pangenome__fasta.delta
| Original Mummer | Modified Code |
|---|---|
|
|
| Highly similar distribution of points and sequence alignments | Highly similar distribution of points and sequence alignments |
| Y-axis is longer - perhaps all alignments were considered | Y-axis is shorter - selectively most alignments considered |
| More compact and prevalent vertical grid lines | Vertical gridlines are sparser, lightly shaded regions between compared genomes - more visually appealing |
| Shorter x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - variable sequence alignment considerations between the 2 plots | Longer x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - variable sequence alignment considerations between the 2 plots |
| Perhaps the optional --filter option was not selected | Perhaps the optional --filter option was selected |
Assembly_2_vs_pangenome__fasta.delta
| Original Mummer | Modified Code |
|---|---|
|  |
| Highly similar distribution of points and sequence alignments | Highly similar distribution of points and sequence alignments |
| Y-axis is longer - perhaps all alignments were considered | Y-axis is shorter - selectively most alignments considered |
| More compact and prevalent vertical grid lines | Vertical gridlines are sparser, lightly shaded regions between compared genomes - more visually appealing |
| Almost similar x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - sequence alignment considerations between plots nearly identical | Almost similar x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - sequence alignment considerations between plots nearly identical |
| Perhaps the optional --filter option was not selected | Perhaps the optional --filter option was selected |
Assembly_3_vs_pangenome__fasta.delta
| Original Mummer | Modified Code |
|---|---|
|  |
| Highly similar distribution of points and sequence alignments | Highly similar distribution of points and sequence alignments |
| Y-axis is longer - perhaps all alignments were considered | Y-axis is shorter - selectively most alignments considered |
| More compact and prevalent vertical grid lines | Vertical gridlines are sparser, lightly shaded regions between compared genomes - more visually appealing |
| Shorter x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - variable sequence alignment considerations between the 2 plots | Longer x-axis tick length for rightmost xtick denoting genomes with prefix 'tig' - variable sequence alignment considerations between the 2 plots |
| Perhaps the optional --filter option was not selected | Perhaps the optional --filter option was selected |
