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HPC for Computational Genomics
Page Information
Title:
HPC for Computational Genomics
Author:
Unknown User (sdthoma2)
Sep 02, 2016
Last Changed by:
Raghid Alhazmy
Oct 03, 2023
Tiny Link:
(useful for email)
https://wiki.ncsa.illinois.edu/x/CwOuAg
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Children (7)
Page:
Cluster creation on AWS
Page:
File lists
Page:
How-To Articles
Page:
Mummerplot Comparison - Original vs Modified Source Code
Page:
Mummerplots
Page:
Pipeline for structural_pangenome environment (previously haptic)
Page:
Results - STRUCT PANGENOME - NGap
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Recent Changes
Time
Editor
Oct 03, 2023 14:37
Raghid Alhazmy
View Changes
Oct 03, 2023 14:27
Raghid Alhazmy
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Oct 03, 2023 13:44
Raghid Alhazmy
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updated staff and active projects
Oct 14, 2022 13:33
Joshua Allen
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Oct 14, 2022 13:27
Christina Fliege
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Outgoing Links
External Links (57)
mel.fshn.illinois.edu
cropsci.illinois.edu/directory/mhudson
hpcbio.illinois.edu/
cropsci.illinois.edu/
www.ncsa.illinois.edu/news/story/collaborative_efforts_prod…
https://github.com/ncsa/NCSA-Genomics_MLCC
www.h3abionet.org/fus
https://github.com/ncsa/NCSA-Genomics_q2b
www.ncsa.illinois.edu/news/story/crossing_over_branching_ou…
www.uofk.edu/index.php?lang=en
oicr.on.ca/
https://www.informatics.illinois.edu/
www.illumina.com/informatics/research/sequencing-data-analy…
compgen.illinois.edu/
https://github.com/ncsa/Genomics_EpiQuant_TensorFlow
https://uofi.box.com/s/39aeq9nmc1mxefjww67cu05szenazlms
www.sentieon.com/
www.ncsa.illinois.edu/news/story/ncsa_groups_sweep_original…
https://software.broadinstitute.org/gatk/
www.ncsa.illinois.edu/news/story/a_better_approach_bringing…
Debugging of H3ABioNet GATK Germline Workflow
www.edicogenome.com/dragen_bioit_platform/
https://github.com/ncsa/parfu_archive_tool
individualizedmedicineblog.mayoclinic.org/2017/08/31/the-gr…
journals.plos.org/plosone/article?id=10.1371/journal.pone.0…
cropsci.illinois.edu/directory/alipka
https://f1000research.com/posters/6-949
www.ncsa.illinois.edu/People/kindr/
https://www.cur.org/conferences_and_events/student_events/n…
https://software.broadinstitute.org/gatk/best-practices/
https://github.com/edrodri2/Swift-Variant-Calling
https://github.com/ncsa/Genomics_EpiQuant_Hadoop
www.ncsa.illinois.edu/news/story/ncsa_student_spotlight_ang…
https://github.com/jacobrh91/Swift-T-Variant-Calling
https://fshn.illinois.edu/directory/zmadake2
https://github.com/ncsa/NCSA-Genomics_UsageAnalyzer
https://github.com/ncsa/NCSA-Genomics_EpiQuant_C
www.ncsa.illinois.edu/news/story/dissco_tech_advancing_the_…
https://uofi.box.com/s/nr7xfpp2wcmph9tnojhbfoqhuusgeaen
spin.ncsa.illinois.edu/
https://bluewaters.ncsa.illinois.edu/science-teams;jsession…
https://github.com/ncsa/NCSA-Genomics_ptgz
https://www.facebook.com/pg/XSEDEscience/photos/?tab=album&…
www.ncsa.illinois.edu/about/fellows_awardees/understanding_…
www.ncsa.illinois.edu/People/csteffen/
www.genalice.com/product/genalice-map/
https://cs.illinois.edu/
www.ncsa.illinois.edu/news/story/history_was_here_ncsas_tec…
https://www.youtube.com/watch?v=ctrBJP9lI7k&list=PLO8UWE9gZ…
www.ncsa.illinois.edu/industry
www.stat.illinois.edu/
www.ncsa.illinois.edu/news/story/after_the_storm_simulating…
https://f1000research.com/posters/5-1076
https://www.biorxiv.org/content/10.1101/396325v1
www.ncsa.illinois.edu/enabling/bluewaters
https://bluewaters.ncsa.illinois.edu/
https://cloud.illinois.edu/2017/12/05/students-capitalize-o…
NCSA Genomics (1)
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HPC for Computational Genomics
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