Title: HPC for Computational Genomics  
Author: Unknown User (sdthoma2) Sep 02, 2016
Last Changed by: Raghid Alhazmy Oct 03, 2023
Tiny Link: (useful for email) https://wiki.ncsa.illinois.edu/x/CwOuAg
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    Page: Cluster creation on AWS
    Page: File lists
    Page: How-To Articles
    Page: Mummerplot Comparison - Original vs Modified Source Code
    Page: Mummerplots
    Page: Pipeline for structural_pangenome environment (previously haptic)
    Page: Results - STRUCT PANGENOME - NGap
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Recent Changes
Time Editor  
Oct 03, 2023 14:37 Raghid Alhazmy View Changes
Oct 03, 2023 14:27 Raghid Alhazmy View Changes
Oct 03, 2023 13:44 Raghid Alhazmy View Changes
updated staff and active projects
Oct 14, 2022 13:33 Joshua Allen View Changes
Oct 14, 2022 13:27 Christina Fliege  
Outgoing Links
External Links (57)
    mel.fshn.illinois.edu
    cropsci.illinois.edu/directory/mhudson
    hpcbio.illinois.edu/
    cropsci.illinois.edu/
    www.ncsa.illinois.edu/news/story/collaborative_efforts_prod…
    https://github.com/ncsa/NCSA-Genomics_MLCC
    www.h3abionet.org/fus
    https://github.com/ncsa/NCSA-Genomics_q2b
    www.ncsa.illinois.edu/news/story/crossing_over_branching_ou…
    www.uofk.edu/index.php?lang=en
    oicr.on.ca/
    https://www.informatics.illinois.edu/
    www.illumina.com/informatics/research/sequencing-data-analy…
    compgen.illinois.edu/
    https://github.com/ncsa/Genomics_EpiQuant_TensorFlow
    https://uofi.box.com/s/39aeq9nmc1mxefjww67cu05szenazlms
    www.sentieon.com/
    www.ncsa.illinois.edu/news/story/ncsa_groups_sweep_original…
    https://software.broadinstitute.org/gatk/
    www.ncsa.illinois.edu/news/story/a_better_approach_bringing…
    Debugging of H3ABioNet GATK Germline Workflow
    www.edicogenome.com/dragen_bioit_platform/
    https://github.com/ncsa/parfu_archive_tool
    individualizedmedicineblog.mayoclinic.org/2017/08/31/the-gr…
    journals.plos.org/plosone/article?id=10.1371/journal.pone.0…
    cropsci.illinois.edu/directory/alipka
    https://f1000research.com/posters/6-949
    www.ncsa.illinois.edu/People/kindr/
    https://www.cur.org/conferences_and_events/student_events/n…
    https://software.broadinstitute.org/gatk/best-practices/
    https://github.com/edrodri2/Swift-Variant-Calling
    https://github.com/ncsa/Genomics_EpiQuant_Hadoop
    www.ncsa.illinois.edu/news/story/ncsa_student_spotlight_ang…
    https://github.com/jacobrh91/Swift-T-Variant-Calling
    https://fshn.illinois.edu/directory/zmadake2
    https://github.com/ncsa/NCSA-Genomics_UsageAnalyzer
    https://github.com/ncsa/NCSA-Genomics_EpiQuant_C
    www.ncsa.illinois.edu/news/story/dissco_tech_advancing_the_…
    https://uofi.box.com/s/nr7xfpp2wcmph9tnojhbfoqhuusgeaen
    spin.ncsa.illinois.edu/
    https://bluewaters.ncsa.illinois.edu/science-teams;jsession…
    https://github.com/ncsa/NCSA-Genomics_ptgz
    https://www.facebook.com/pg/XSEDEscience/photos/?tab=album&…
    www.ncsa.illinois.edu/about/fellows_awardees/understanding_…
    www.ncsa.illinois.edu/People/csteffen/
    www.genalice.com/product/genalice-map/
    https://cs.illinois.edu/
    www.ncsa.illinois.edu/news/story/history_was_here_ncsas_tec…
    https://www.youtube.com/watch?v=ctrBJP9lI7k&list=PLO8UWE9gZ…
    www.ncsa.illinois.edu/industry
    www.stat.illinois.edu/
    www.ncsa.illinois.edu/news/story/after_the_storm_simulating…
    https://f1000research.com/posters/5-1076
    https://www.biorxiv.org/content/10.1101/396325v1
    www.ncsa.illinois.edu/enabling/bluewaters
    https://bluewaters.ncsa.illinois.edu/
    https://cloud.illinois.edu/2017/12/05/students-capitalize-o…
NCSA Genomics (1)     Home page: HPC for Computational Genomics