CloudBLAST

Scalable BLAST in the cloud
(http://www.acis.ufl.edu/~ammatsun/mediawiki-1.4.5/index.php/CloudBLAST_Project)

CloudBurst

Highly sensitive short-read mapping
(http://cloudburst-bio.sf.net/)

Cloud RSD

Reciprocal smallest distance ortholog detection
(http://roundup.hms.harvard.edu)

Contrail

De novo assembly of large genomes
(http://contrail-bio.sf.net)

Crossbow

Alignment and SNP genotyping
(http://bowtie-bio.sf.net/crossbow)

Myrna (B.L.,
K. Hansen and J. Leek,
unpublished data)

Differential expression analysis of mRNA-seq
(http://bowtie-bio.sf.net/myrna)

Quake (D.R. Kelley,
M.C.S. and S.L.S.,
unpublished data)

Quality guided correction of short reads
(https://github.com/davek44/error_correction/)