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| Description | Extract from minigraph pangenome all fragmented sequences in a FASTA file |
| Command | structural_pangenome convert gfa2fa assembly_1_2_3.gfa > -o 2.3.Stat/pangenome__fasta.fas |
| Parameters | gfa2fa: convert GFA file to FASTA file |
| Input | One gfa file for all assemblies (GFA) |
| Output | One FASTA file for the whole pangenome (OUTPUT) |
| Usage | structural_pangenome convert gfa2fa GFA > -o OUTPUT |
| Example | structural_pangenome convert gfa2fa 2.2.gfas/assembly123.gfa > -o 2.3.Stat/pangenome__fasta.fas |
| Parallelizable | No |
| Optional | No |
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