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Description | Report the stretch of N (Ngap) in each assembly |
Command | haptic find-ngaps assembly_fasta_file_file -o output_file structural_pangenome find-ngaps assembly_fasta_file -o output_file OR haptic find-ngaps assembly_fasta_file_file -p prefix_folder structural_pangenome find-ngaps assembly_fasta_file -p prefix_folder |
Parameters | o: output filename (with complete path) p: prefix_folder which stores the resulting output file. |
Input | Fasta file for each assembly |
output | Ngap.bed file for each assembly |
Example | haptic find-ngaps fastas/assembly_1.fas -o outputs/resulting_ngaps.bed structural_pangenome find-naps fastas/assembly_1.fas -o outputs/resulting_ngaps.bed |
Can be Parallelized | Yes |
Optional | No |
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